| 2025 | IEEE Computer Society Charles Babbabge Award | 
2023 | Regents' Professorship, Georgia Institute of Technology | 2023 | Outstanding Faculty Leadership Award, College of Computing, Georiga Institute of Technology | 2021 | Finalist for Best Reproducibility Advancement Award, ACM/IEEE Supercomputing Conference (SC) | 2021 | ACM SIGHPC Certificate of Appreciation for the SC2020 paper selected for Student Cluster Competition Reproducibility Challenge, ACM/IEEE Supercomputing Conference (SC) | 2020 | Fellow, ACM for contributions to parallel methods in computational biology | 2020 | Fellow, SIAM for contributions to sequential and parallel discrete algorithms in computational genomics | 2019 | Outstanding Achievement in Research Program Development Award, Georgia Institute of Technology | 2017 | John V. Atanasoff Discovery Award | 2016 | ACM SIGHPC Certificate of Recognition for Reproducible Methods in Scientific Research | 2016 | Outstanding Senior Faculty Research Award, College of Computing, Georgia Institute of Technology | 2015 | Best student paper, ACM/IEEE Supercomputing Conference (SC) | 2015 | IEEE Computer Society Meritorious Service Award | 2015 | College of Computing Dean's Award, Georgia Institute of Technology | 2014 | Best paper finalist, ACM/IEEE Supercomputing Conference (SC) | 2011 | Iowa State University Award for Outstanding Achievement in Research | 2010 | Fellow, AAAS for contributions to high performance computational biology | 2010 | Fellow, IEEE for contributions to computational biology | 
| 2009-2013 | Ross Martin Mehl and Marylyne Munas Mehl Endowed Professorship, Iowa State University | 
| 2009-2012 | Bajaj Chair Professorship, Indian Institute of Technology Bombay | 
| 2008 | Swarnajayanti Fellowship, Department of Science and Technology, Government of India | 
| 2007 | Best paper finalist, ACM/IEEE Supercomputing Conference (SC) | 
| 2007 | Computer World Honors Program Laureate and Finalist for 21st Century Achievement Award in Energy, Environment and Agriculture | 
 
| 2006-2009 | Stanley Chair in Interdisciplinary Engineering, Iowa State University | 
							
						| 2006 | Iowa State University Foundation Award for Mid-Career Achievement in Research | 
	
						| 2006 | Best paper award, IEEE International Parallel and Distributed Processing Symposium (IPDPS) | 
							 
						| 2005 | Best paper award, IEEE Computational Systems Bioinformatics (CSB) conference | 
 
						| 2005 | Warren B. Boast Undergraduate Teaching Award, Iowa State University | 
							 
						| 2004-2006 | IEEE Computer Society Distinguished Visitor | 
							
						| 2002 | IBM Faculty Award | 
						| 2002 | Young Engineering Faculty Research Award, Iowa State University | 
| 2002 | Best paper finalist, ACM/IEEE Supercomputing Conference (SC) | 
							
						| 1997 | NSF CAREER Award |